Indian Journal of Animal Research
SCOPUSWeb of Science
  • Year: 2026
  • Volume: 60
  • Issue: 5

Development of a PCR Assay for Early Screening of Intersex Goats

  • Author:
  • Yaying Li12#, Jiangfeng Ye12#, Lin Zhang3, Dinghui Dai12, Jiaxue Cao12, Jiazhong Guo12, Tao Zhong12, Linjie Wang12, Li Li12*, Hongping Zhang12**
  • Total Page Count: 7
  • Page Number: 824 to 830

1Key Laboratory of Livestock and Poultry Multi-Omics, Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu611130, China.

2Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu611130, China.

3Xilingxue Agricultural Development Ltd., Chengdu611130, China.

*Corresponding Author: Li Li, Key Laboratory of Livestock and Poultry Multi-Omics, Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu611130, China; Email: lily@sicau.edu.cn (L.L)

**Hongping Zhang, Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu611130, China. Email: zhp@sicau.edu.cn (H.Z)

These authors contributed equally to this study.

Abstract

Intersex conditions are commonly observed in dioecious animals, particularly in goats, with a higher incidence in polled individuals. Understanding the phenotypic traits associated with intersex goats and developing effective screening methods are essential for early identification and genetic improvement in breeding programs.

This study involved the collection of whole blood and gonadal tissues from 11 Chuanzhong Black goats (7 normal, 4 intersex), 6 Gulin Ma goats and 1 Tianfu goat (suspected intersex). Genomic DNA was extracted from jugular venous blood for molecular analysis and gonadal tissues were examined using hematoxylin-eosin staining. A multiplex PCR assay was developed to detect specific genetic variations linked to intersex conditions.

All four intersex Chuanzhong Black goats were polled (lacked horns) and exhibited abnormal external genitalia, classified as hermaphroditic, female-like, or male-like. These goats also showed signs of disordered coat condition, hair loss and dirty hindquarters. Both internal and external reproductive organs exhibited varying developmental defects. Molecular analysis revealed the absence of the Y chromosome and structural variations in the PIS region, including homozygous deletions and reverse-repeat insertions. The developed multiplex PCR assay effectively identified intersex individuals in the Chuanzhong Black, Gulin Ma and Tianfu goat breeds.

Keywords

Goats, Intersex, Polled intersex syndrome (PIS)